Public release:

Biopet is built on top of GATK Queue for building bioinformatic 
pipelines. It is mainly intended to support LUMC SHARK cluster which is running 
SGE. But other types of HPC that are supported by GATK Queue (such as PBS) 
should also be able to execute Biopet tools and pipelines. 

Copyright 2014 Sequencing Analysis Support Core - Leiden University Medical Center

Contact us at:

A dual licensing mode is applied. The source code within this project that are 
not part of GATK Queue is freely available for non-commercial use under an AGPL 
license; For commercial users or users who do not want to follow the AGPL 
license, please contact us to obtain a separate license.

Private release:

Due to the license issue with GATK, this part of Biopet can only be used inside the 
LUMC. Please refer to for instructions 
on how to use this protected part of biopet or contact us at
Copyright [2013-2014] [Sequence Analysis Support Core](