About Biopet

The Philosophy

Biopet is meant to be the core framework for data analysis pipelines developed by SASC (and collaborators). It consists of wrappers of common command-line tools, some production-level data analysis pipelines, and some custom command-line tools that we develop in-house.

Pipelines developed using the Biopet framework are meant to be flexible, allowing users to modify the actual command line flags of the tools within to suit their need.


As of the 0.5.0 release, the following people (sorted by last name) have contributed to Biopet:

  • Wibowo Arindrarto
  • Sander Bollen
  • Peter van 't Hof
  • Leon Mei
  • Wai Yi Leung
  • Sander van der Zeeuw


Check our website at: SASC

Or send us an email: SASC mail