Biopet User Manual
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    • General
    • Config
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    • About
    • License
    • Pipelines
    • Basty (Snp typing)
    • Bam2Wig
    • Carp (chip-seq)
    • Flexiprep (QC)
    • Gears (Metagenome)
    • Gentrap (RNA-seq)
    • Kopisu (CNV Calling)
    • Mapping (Alignment)
    • Sage
    • Shiva (variantcalling)
    • TinyCap (smallRNA)
    • Toucan (Annotation)
    • Tools
    • AnnotateVcfWithBed
    • BaseCounter
    • BastyGenerateFasta
    • BedToInterval
    • BedtoolsCoverageToCounts
    • BiopetFlagstat
    • CheckAllelesVcfInBam
    • DownloadNcbiAssembly
    • ExtractAlignedFastq
    • FastqFilter
    • FastqSplitter
    • FastqSync
    • FindOverlapMatch
    • FindRepeatsPacBio
    • GvcfToBed
    • MergeAlleles
    • MergeTables
    • MpileupToVcf
    • PrefixFastq
    • SageCountFastq
    • sagetools
    • SamplesTsvToConfig
    • SeqStat
    • SquishBed
    • SummaryToTsv
    • ValidateFastq
    • ValidateVcf
    • VcfFilter
    • VcfToTsv
    • VcfWithVcf
    • VepNormalizer
    • WipeReads
    • Release notes
    • 0.7.0
    • 0.6.0
    • 0.5.0
    • 0.4.0
    • 0.3.2
    • 0.3.1
    • 0.3.0
    • Developer
    • Getting Started
    • Code Style
    • Example Dependecies
    • Example Pipeline
    • Example Tool
    • Example Pipeable
    • Scala docs
 
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