SeqStat

Introduction

Example

The help menu:



SeqStat - Summarize FastQ

Usage: SeqStat [options]

  -l <value> | --log_level <value>
        Level of log information printed. Possible levels: 'debug', 'info', 'warn', 'error'
  -h | --help
        Print usage
  -v | --version
        Print version
  -i <fastq> | --fastq <fastq>
        FastQ file to generate stats from
  -o <json> | --output <json>
        File to write output to, if not supplied output go to stdout


To run the tool use:

biopet tool SeqStat    

Output